Basic Information
Locus ID:
gene-LOC132612347
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3275632 | 3279540 | + | gene-LOC132612347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 100,714.89 Da | 41.62 | 88.52 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 587 | 860 | 3.93207E-93 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 584 | 854 | 8.6E-48 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 317 | 355 | 0.0057 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 20 | 55 | 0.026 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 438 | 7.48E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 556 | 857 | 2.7E-79 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 318 | 443 | 8.8E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 659 | 882 | 1.1E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 542 | 658 | 1.1E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 315 | 2.1E-66 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 82 | 104 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 128 | 1.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 406 | 74.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 581 | 861 | 3.0E-43 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 581 | 861 | 41.389313 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 107 | 128 | 7.21911 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 587 | 609 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 706 | 718 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 930 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009794479.1 | PREDICTED: probable receptor protein kinase TMK1 isoform X1 [Nicotiana sylvestris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7Y5G8 | probable receptor protein kinase TMK1 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104241249 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology