Basic Information
Locus ID:
gene-LOC132612341
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 117273496 | 117275331 | + | gene-LOC132612341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 49,245.30 Da | 37.48 | 85.23 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 100 | 450 | 1.22733E-86 | IPR034161 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 101 | 274 | 1.1E-51 | IPR032861 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 296 | 445 | 1.6E-24 | IPR032799 |
| SUPERFAMILY | SSF50630 | Acid proteases | 96 | 450 | 2.17E-85 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 276 | 452 | 8.1E-45 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 74 | 273 | 3.3E-52 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 101 | 446 | 41.398293 | IPR033121 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 6.0 | - |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 331 | 342 | - | IPR001969 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G33340.1 | Eukaryotic aspartyl protease family protein. Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation. | 0 |
| RefSeq | XP_019238561.1 | PREDICTED: aspartic proteinase CDR1-like [Nicotiana attenuata] | 0 |
| Q6XBF8 | Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6KFQ9 | Aspartic proteinase cdr1 OS=Nicotiana attenuata OX=49451 GN=CDR1_4 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology