halophFGD

Basic Information

Locus ID: gene-LOC132612098

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	103848672	103849436	+	gene-LOC132612098

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.79	29,352.98 Da	49.76	73.19	-0.80

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	2	98	5.4E-20	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	165	179	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	162	254	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	215	245	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	191	214	-	-

KEGG Pathway

KO Term:

K01057 (6-phosphogluconolactonase [EC:3.1.1.31])

Pathway:

ko00030 (Pentose phosphate pathway) map00030 (Pentose phosphate pathway) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism)

Module:

M00004 (Pentose phosphate pathway (Pentose phosphate cycle)) M00006 (Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P) M00008 (Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate)

Reaction:

R02035 (D-Glucono-1,5-lactone 6-phosphate + H2O <=> 6-Phospho-D-gluconate)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_018631621.1	uncharacterized protein LOC108947774 [Nicotiana tomentosiformis]	0
TrEMBL	A0A1J6IDQ0	DUF4283 domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_10946 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933