Basic Information
Locus ID:
gene-LOC132611646
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-box and associated interaction domains-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 12104280 | 12105422 | - | gene-LOC132611646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 43,827.37 Da | 40.89 | 98.21 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 215 | 290 | 6.3E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 9 | 49 | 1.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 56 | 3.4E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 63 | 2.5E-6 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 3.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 332 | 9.0E-27 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 8.914593 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_016507272.1 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tabacum] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G3CSQ4 | F-box domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_06855 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1487 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132610589, gene-LOC132611646, gene-LOC132611647 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI002731400, SOLCI002982900, SOLCI003874500 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009918, gene-LOC107009922, gene-LOC107009962 ... |