Basic Information
Locus ID:
gene-LOC132611549
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4818347 | 4819456 | + | gene-LOC132611549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 43,553.35 Da | 43.47 | 92.36 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 47 | 6.6E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 199 | 281 | 4.2E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 77 | 1.96E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 43 | 1.3E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 47 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10340.1 | F-box family protein. | 0 |
| RefSeq | XP_049361181.1 | F-box protein At5g49610-like [Solanum verrucosum] | 0 |
| Q9LX89 | F-box protein At5g10340 OS=Arabidopsis thaliana OX=3702 GN=At5g10340 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314KMM5 | Putative f-box protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_56852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |