Basic Information
Locus ID:
gene-LOC132611547
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4647809 | 4648696 | + | gene-LOC132611547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 33,598.95 Da | 36.48 | 92.17 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 138 | 232 | 1.4E-8 | IPR013187 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 19 | 245 | 2.88E-7 | IPR011043 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 19 | 233 | 2.8E-23 | IPR017451 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | 6.0 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_049361181.1 | F-box protein At5g49610-like [Solanum verrucosum] | 0 |
| TrEMBL | A0A1U8G7S8 | F-box protein At5g49610-like OS=Capsicum annuum OX=4072 GN=LOC107865704 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |