Basic Information
Locus ID:
gene-LOC132611160
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 11594753 | 11600100 | + | gene-LOC132611160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 124,090.76 Da | 58.70 | 73.37 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 175 | 268 | 1.41012E-47 | - |
| CDD | cd13999 | STKc_MAP3K-like | 838 | 1098 | 4.26145E-107 | - |
| Pfam | PF00564 | PB1 domain | 187 | 270 | 1.2E-22 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 834 | 1098 | 1.7E-61 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 821 | 1097 | 4.43E-76 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 187 | 274 | 5.15E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 825 | 919 | 5.6E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 920 | 1112 | 2.2E-51 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 190 | 271 | 1.2E-14 | - |
| SMART | SM00220 | serkin_6 | 832 | 1105 | 4.3E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 186 | 271 | 2.8E-32 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 832 | 1105 | 40.611942 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 960 | 972 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 838 | 859 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1069 | 1091 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1025 | 1047 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 914 | 927 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 954 | 972 | 1.1E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 531 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_006360331.1 | PREDICTED: uncharacterized protein LOC102578368 [Solanum tuberosum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | M1CWA4 | Serine/threonine protein kinase OS=Solanum tuberosum OX=4113 GN=102578368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology