Basic Information
Locus ID:
gene-LOC132611120
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13059443 | 13060974 | - | gene-LOC132611120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 35,751.90 Da | 40.30 | 59.18 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 24 | 64 | 1.37092E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 85 | 315 | 8.70781E-115 | - |
| Pfam | PF00182 | Chitinase class I | 84 | 315 | 5.1E-137 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 25 | 63 | 3.9E-13 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 25 | 72 | 1.27E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 80 | 322 | 1.52E-109 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 66 | 328 | 1.6E-93 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 167 | 221 | 5.2E-28 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 23 | 65 | 1.9E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 25 | 63 | 1.7E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 2 | 322 | 3.9E-125 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 23 | 65 | 10.851026 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 102 | 124 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 35 | 54 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 228 | 238 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 41 | 48 | 7.2E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 33 | 41 | 7.2E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 48 | 55 | 7.2E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_009797267.1 | PREDICTED: endochitinase 3 [Nicotiana sylvestris] | 0 |
| P29059 | Endochitinase 3 OS=Nicotiana tabacum OX=4097 GN=CHN14 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1S3YVP8 | endochitinase 3-like OS=Nicotiana tabacum OX=4097 GN=LOC107780391 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology