Basic Information
Locus ID:
gene-LOC132611101
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 8896318 | 8899715 | + | gene-LOC132611101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 29,594.47 Da | 72.56 | 89.77 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 209 | 255 | 1.5E-12 | - |
| Pfam | PF08969 | USP8 dimerisation domain | 8 | 97 | 4.5E-13 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 12 | 116 | 2.35E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 256 | 4.82E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 261 | 9.4E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.58.80 | - | 5 | 129 | 1.9E-31 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 211 | 250 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 201 | - | - |
| Coils | Coil | Coil | 81 | 108 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_016554526.2 | AMSH-like ubiquitin thioesterase 3 [Capsicum annuum] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8F774 | AMSH-like ubiquitin thioesterase 3 OS=Capsicum annuum OX=4072 GN=LOC107854037 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology