Basic Information
Locus ID:
gene-LOC132610901
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6564075 | 6570792 | - | gene-LOC132610901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 56,416.15 Da | 55.34 | 75.50 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 17 | 57 | 4.57807E-11 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 17 | 57 | 1.2E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 70 | 4.95E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 114 | 9.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 57 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 58 | 11.530333 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 33 | 42 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 373 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.1 | DREB2A-interacting protein 1. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_009614943.1 | E3 ubiquitin protein ligase DRIP1-like [Nicotiana tomentosiformis] | 0 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6I182 | E3 ubiquitin protein ligase drip1 OS=Nicotiana attenuata OX=49451 GN=DRIP1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610900, gene-LOC132610901 |
| Solanaceae | Solanum chilense | 1 | SOLCI001357700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107030463, gene-LOC107030865, gene-LOC114076095 |