Basic Information
Locus ID:
gene-LOC132610879
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14811156 | 14826396 | - | gene-LOC132610879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 172,938.55 Da | 55.10 | 67.01 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 708 | 747 | 3.1118E-19 | - |
| Pfam | PF16135 | Tify domain binding domain | 630 | 680 | 8.2E-20 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 708 | 750 | 1.1E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 697 | 752 | 2.44E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 897 | 967 | 1.45E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 694 | 766 | 6.7E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 749 | 807 | 1.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 707 | 748 | 1.6E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 705 | 750 | 10.291 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1474 | 1589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1173 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1242 | 1397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1173 | 1198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1486 | 1531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1553 | 1573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1428 | 1457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1242 | 1304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1360 | 1379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1428 | 1454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 517 | - | - |
| Coils | Coil | Coil | 464 | 484 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_016565847.2 | uncharacterized protein LOC107864099 [Capsicum annuum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8G3B0 | uncharacterized protein LOC107864099 OS=Capsicum annuum OX=4072 GN=LOC107864099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology