Basic Information
Locus ID:
gene-LOC132610800
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
BRIGHT, ARID (A/T-rich interaction domain) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4705771 | 4712916 | + | gene-LOC132610800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 53,555.12 Da | 57.82 | 73.87 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 3.97818E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 2.67834E-44 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 2.9E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 5.8E-16 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 255 | 334 | 1.13E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 129 | 5.89E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 247 | 343 | 3.6E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 27 | 132 | 4.6E-24 | IPR036431 |
| SMART | SM00398 | hmgende2 | 262 | 331 | 1.6E-18 | IPR009071 |
| SMART | SM00501 | bright_3 | 35 | 126 | 2.0E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 6.3E-26 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 24.461987 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 14.740975 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 451 | - | - |
| Coils | Coil | Coil | 426 | 453 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_049406771.1 | high mobility group B protein 15-like [Solanum stenotomum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | M1D3D9 | Transcription factor OS=Solanum tuberosum OX=4113 GN=102578765 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology