Basic Information
Locus ID:
gene-LOC132610533
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 24976354 | 24984199 | - | gene-LOC132610533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 85,050.12 Da | 42.44 | 96.19 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 237 | 279 | 7.06535E-23 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 524 | 561 | 3.1E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 233 | 304 | 9.0E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 563 | 602 | 4.8E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 647 | 683 | 9.3E-5 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 305 | 1.3E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 481 | 765 | 2.81E-49 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 629 | 772 | 2.7E-29 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 308 | 1.1E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 471 | 628 | 6.8E-32 | IPR011989 |
| SMART | SM00185 | arm_5 | 645 | 684 | 7.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 727 | 767 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 522 | 562 | 0.0077 | IPR000225 |
| SMART | SM00185 | arm_5 | 604 | 644 | 0.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 563 | 603 | 0.055 | IPR000225 |
| SMART | SM00185 | arm_5 | 685 | 725 | 14.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 236 | 299 | 7.3E-30 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 615 | 657 | 9.1874 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 574 | 616 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 491 | 533 | 8.8724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 232 | 306 | 39.197063 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 656 | 697 | 12.2324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 533 | 575 | 9.8524 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 778 | - | - |
| Coils | Coil | Coil | 176 | 196 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54790.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_009614285.1 | U-box domain-containing protein 3 isoform X1 [Nicotiana tomentosiformis] | 0 |
| Q8GWV5 | U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S3YS71 | RING-type E3 ubiquitin transferase OS=Nicotiana tabacum OX=4097 GN=LOC107779205 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19294 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000157 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31389, Sbi_jg57887 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026711 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54453, Sgl59793 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007174, gene:ENSEOMG00000023422 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026570, CQ.Regalona.r1.5BG0028100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016270 |
| Apiaceae | Apium graveolens | 1 | Ag10G00889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.72.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00324 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010139m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065160.2N, BniB08g069050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1400 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6357, nbisL1-mrna-9712 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1343 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002266 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10270, Lb4G23512, Lb4G23513 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2923, evm.TU.LG02.1213, evm.TU.LG09.755 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11573 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10286 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.380 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9909 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19816 |
| Salicaceae | Populus euphratica | 3 | populus_peu15198, populus_peu15199, populus_peu32866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610533 |
| Solanaceae | Solanum chilense | 1 | SOLCI001666900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031342 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20338_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2422 |