Basic Information
Locus ID:
gene-LOC132610490
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
BOBBER 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4125957 | 4126469 | + | gene-LOC132610490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 20,099.06 Da | 29.73 | 90.59 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06467 | p23_NUDC_like | 34 | 118 | 3.36795E-18 | - |
| Pfam | PF04969 | CS domain | 33 | 108 | 2.0E-11 | IPR007052 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 18 | 130 | 4.19E-26 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 16 | 132 | 1.1E-27 | IPR008978 |
| ProSiteProfiles | PS51203 | CS domain profile. | 29 | 118 | 14.154046 | IPR007052 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27890.1 | HSP20-like chaperones superfamily protein. | 0 |
| RefSeq | XP_016444389.1 | PREDICTED: protein BOBBER 2-like [Nicotiana tabacum] | 0 |
| Q9STN7 | Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3XWY9 | protein BOBBER 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107769666 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10253, jg13886, jg33931 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3306 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018630 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42066, Sbi_jg48124 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27481 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020062 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01347, Sgl06425, Sgl06429 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002823, gene:ENSEOMG00000025603 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0005070, CQ.Regalona.r1.3BG0005080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164490 |
| Apiaceae | Apium graveolens | 3 | Ag10G02521, Ag3G02043, Ag4G02667 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007810, COCNU_03G005570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700242, gene-LOC103721229 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1670.V1.1, AsparagusV1_07.3545.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G18396 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G27890.1, AT5G53400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014254m.g.v1.0, Thhalv10025870m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g03220.v2.2, Sp6g15540.v2.2, Sp7g25860.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g031720.2N, BniB05g009540.2N, BniB05g032700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1766 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0042s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.672 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00039436, Pov_00041150 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04187 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.919, BH06.951, CH06.1045 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0514830, gene-QOZ80_6BG0466540 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0323630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028929 |
| Poaceae | Oryza coarctata | 3 | Oco04G022050, Oco11G005970, Oco12G006010 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g51000.1, LOC_Os06g12530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G097500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404761, Pt_Chr0404772, Pt_Chr0603407 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G019500, Chr14G004470, Chr21G003850 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G826900, Tel3E01G827000, Tel7E01G348500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG071430, gene_TRIDC3AG071440 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G502900.1.cds1, TraesCS3A02G503000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb279760_P002, Zm00001eb372220_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35135 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31632 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1540, evm.TU.LG02.753, evm.TU.LG11.1665 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24440 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.159, evm.TU.Scaffold_1_RagTag.628 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14367, nbisL1-mrna-7501 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15209 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5649 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011184 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16897, nbisL1-mrna-8406 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19075, nbisL1-mrna-748 |
| Salicaceae | Populus euphratica | 3 | populus_peu03281, populus_peu28035, populus_peu34121 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132609849, gene-LOC132610490, gene-LOC132611005 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002031800, SOLCI002031900, SOLCI004703900 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009964, gene-LOC107015157, gene-LOC107030486 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9965 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1521, TC08G1393 |
| Zosteraceae | Zostera marina | 3 | Zosma03g30870.v3.1, Zosma05g16080.v3.1, Zosma06g15200.v3.1 |