Basic Information
Locus ID:
gene-LOC132610372
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23912870 | 23923177 | + | gene-LOC132610372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 170,690.27 Da | 40.85 | 107.75 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 967 | 1261 | 1.45892E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1283 | 1503 | 3.09029E-128 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 641 | 841 | 6.19279E-105 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 328 | 615 | 9.35153E-106 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1302 | 1450 | 1.1E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 595 | 4.7E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 661 | 793 | 1.3E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 969 | 1211 | 8.8E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 966 | 1266 | 1.7E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1275 | 1515 | 3.72E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 626 | 6.02E-40 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 636 | 863 | 1.78E-54 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 928 | 1267 | 4.2E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 624 | 5.4E-56 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 639 | 871 | 2.5E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1271 | 1520 | 2.4E-82 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1311 | 1496 | 3.2E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 668 | 841 | 4.5E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1285 | 1519 | 18.020672 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 641 | 864 | 22.595812 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 969 | 1239 | 35.369843 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 330 | 607 | 36.757866 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 766 | 780 | - | IPR017871 |
| Coils | Coil | Coil | 916 | 945 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_016541729.1 | ABC transporter C family member 5 [Capsicum annuum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G2VCG3 | ABC-type xenobiotic transporter OS=Capsicum baccatum OX=33114 GN=CQW23_29727 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology