Basic Information
Locus ID:
gene-LOC132610349
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23793978 | 23801884 | + | gene-LOC132610349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 61,138.86 Da | 34.80 | 92.93 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 239 | 532 | 2.55184E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 532 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 237 | 273 | 8.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 362 | 0.059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 309 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 490 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 233 | 532 | 3.05E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 228 | 536 | 4.5E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 406 | 444 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 318 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 0.0038 | IPR001680 |
| SMART | SM00668 | ctlh | 71 | 128 | 0.0036 | IPR006595 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 533 | 5.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 490 | 0.15 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 539 | 11.73468 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 322 | 10.205597 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 71 | 128 | 9.227975 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 274 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 274 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 327 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 499 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 532 | 12.513543 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006355901.1 | PREDICTED: WD repeat-containing protein 26 [Solanum tuberosum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0IE90 | Putative WD repeat-containing protein 26-like OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology