Basic Information
Locus ID:
gene-LOC132610332
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18278788 | 18287932 | + | gene-LOC132610332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 46,023.20 Da | 35.11 | 87.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 134 | 385 | 2.67206E-97 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 28 | 104 | 1.3E-10 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 131 | 385 | 5.0E-58 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 131 | 385 | 8.23E-74 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 17 | 106 | 1.27E-19 | IPR036770 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 125 | 207 | 1.1E-21 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 124 | 5.2E-20 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 208 | 399 | 3.1E-53 | - |
| SMART | SM00248 | ANK_2a | 49 | 78 | 0.0011 | IPR002110 |
| SMART | SM00248 | ANK_2a | 82 | 112 | 1300.0 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 3 | 398 | 9.9E-116 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 49 | 81 | 11.107922 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 49 | 81 | 12.475739 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 128 | 392 | 44.696667 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 134 | 155 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 311 | 333 | 1.7E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 356 | 378 | 1.7E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 203 | 216 | 1.7E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 242 | 260 | 1.7E-12 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_049373915.1 | integrin-linked protein kinase 1-like isoform X1 [Solanum verrucosum] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4B0L6 | serine/threonine-protein kinase STY8-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107803316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |