Basic Information
Locus ID:
gene-LOC132610154
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22632539 | 22638768 | + | gene-LOC132610154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 70,268.66 Da | 28.64 | 99.76 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 207 | 251 | 1.3E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 175 | 205 | 0.009 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 420 | 444 | 0.023 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 69 | 96 | 0.19 | IPR002885 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 466 | 597 | 4.3E-9 | IPR033443 |
| Pfam | PF13041 | PPR repeat family | 309 | 356 | 7.5E-17 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 375 | 407 | 1.7E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 278 | 305 | 0.18 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 422 | 586 | 7.06E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 157 | 8.2E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 324 | 452 | 7.7E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 158 | 307 | 1.6E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 453 | 547 | 3.2E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 548 | 611 | 1.9E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 70 | 104 | 0.0027 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 522 | 555 | 8.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 210 | 237 | 6.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 557 | 589 | 8.7E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 175 | 208 | 7.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 487 | 518 | 2.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 347 | 379 | 6.3E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 459 | 484 | 4.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 381 | 409 | 1.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 241 | 275 | 4.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 311 | 345 | 8.1E-10 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 173 | 207 | 11.049048 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 208 | 238 | 10.347525 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 309 | 343 | 13.022082 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | 9.086975 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 554 | 588 | 11.586152 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 379 | 413 | 10.007725 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 484 | 518 | 10.873667 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | 11.531345 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 519 | 553 | 8.53891 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 239 | 273 | 9.525427 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 449 | 483 | 9.393891 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17525.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_047271382.1 | pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Capsicum annuum] | 0 |
| Q84VG6 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8G9K8 | pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Capsicum annuum OX=4072 GN=LOC107866456 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6497 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15202, Sbi_jg56024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26503 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02222, Sgl07378 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030064, gene:ENSEOMG00000045211 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009180, CQ.Regalona.r1.3BG0009360 |
| Apiaceae | Apium graveolens | 1 | Ag3G01768 |
| Arecaceae | Cocos nucifera | 1 | scaffold020636G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103774 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22357 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g065500.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g13010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2888 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013333 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb8G36056, Lb8G36059 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1654, evm.TU.LG11.1007 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2202 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11639 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23702 |
| Salicaceae | Populus euphratica | 1 | populus_peu14041 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610154 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031224 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25127_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0871 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23520.v3.1 |