Basic Information
Locus ID:
gene-LOC132610110
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22298410 | 22305833 | - | gene-LOC132610110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 84,172.27 Da | 49.64 | 67.63 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 494 | 772 | 1.92442E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 654 | 689 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 607 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 493 | 522 | 5.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 564 | 1.8E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 772 | 3.0E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 622 | 1.6E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 623 | 772 | 4.5E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 568 | 608 | 9.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 648 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 689 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 522 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 692 | 731 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 733 | 772 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 564 | 1.3E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 532 | 564 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 740 | 772 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 772 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 532 | 564 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 658 | 698 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 497 | 531 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 617 | 9.071468 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 509 | 523 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 407 | - | - |
| Coils | Coil | Coil | 93 | 113 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_009760188.1 | PREDICTED: transcriptional corepressor LEUNIG [Nicotiana sylvestris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7V1C4 | transcriptional corepressor LEUNIG OS=Nicotiana sylvestris OX=4096 GN=LOC104212582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology