Basic Information
Locus ID:
gene-LOC132610088
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22066563 | 22071580 | - | gene-LOC132610088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 101,100.80 Da | 47.81 | 94.87 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 621 | 887 | 3.85816E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 438 | 496 | 5.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 618 | 883 | 4.2E-46 | IPR000719 |
| Pfam | PF12819 | Malectin-like domain | 31 | 345 | 5.5E-53 | IPR024788 |
| SUPERFAMILY | SSF52058 | L domain-like | 358 | 517 | 3.1E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 602 | 888 | 1.35E-75 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 192 | 345 | 3.8E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 353 | 552 | 2.4E-28 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 691 | 897 | 1.5E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 579 | 690 | 8.9E-30 | - |
| SMART | SM00220 | serkin_6 | 615 | 891 | 1.1E-39 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 459 | 483 | 8.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 436 | 458 | 8.7 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 615 | 897 | 39.848705 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 621 | 643 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 737 | 749 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48740.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_049360724.1 | probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Solanum verrucosum] | 0 |
| C0LGV0 | Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana OX=3702 GN=At5g48740 PE=1 SV=1 | 0 | |
| TrEMBL | M1BHS6 | Kinase OS=Solanum tuberosum OX=4113 GN=102586519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36125, jg8038 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028266 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26545, Sbi_jg34022 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011923 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73830, Sgl77187, Sgl77332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041428 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010340, CQ.Regalona.r1.7BG0012420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014480 |
| Apiaceae | Apium graveolens | 1 | Ag10G00761 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G004280, COCNU_15G004290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710569, gene-LOC103724286 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.898.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30587 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003630m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g069800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1996 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2104 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1563 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011577 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1027, evm.TU.LG12.704 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1208 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11679 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9079 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11240 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.704 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013562 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9839 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19907 |
| Salicaceae | Populus euphratica | 1 | populus_peu30911 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610088 |
| Solanaceae | Solanum chilense | 1 | SOLCI001110400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031385 |