Basic Information
Locus ID:
gene-LOC132610042
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 20884911 | 20888690 | + | gene-LOC132610042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 101,340.16 Da | 37.97 | 92.26 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 600 | 873 | 1.11942E-96 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 46 | 79 | 0.0038 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 343 | 378 | 0.036 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 597 | 868 | 1.5E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 68 | 448 | 6.33E-43 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 570 | 870 | 3.46E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 672 | 887 | 7.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 557 | 671 | 3.4E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 341 | 466 | 5.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 334 | 2.3E-68 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 128 | 151 | 7.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 127 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 202 | 225 | 0.68 | IPR003591 |
| SMART | SM00220 | serkin_6 | 594 | 874 | 3.2E-43 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 404 | 428 | 160.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 594 | 874 | 40.993561 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 107 | 129 | 8.027684 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 600 | 622 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 719 | 731 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 494 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_049365760.1 | receptor-like kinase TMK4 [Solanum verrucosum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8E4I4 | Putative receptor protein kinase TMK1 OS=Capsicum annuum OX=4072 GN=T459_23278 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology