Basic Information
Locus ID:
gene-LOC132609881
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 124648505 | 124705304 | + | gene-LOC132609881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 79,996.92 Da | 41.21 | 71.70 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 453 | 698 | 5.69683E-127 | - |
| CDD | cd00130 | PAS | 39 | 128 | 3.00069E-11 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 448 | 697 | 2.1E-66 | IPR001245 |
| Pfam | PF13426 | PAS domain | 38 | 128 | 4.1E-11 | IPR000014 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 427 | 697 | 2.56E-80 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 38 | 128 | 2.27E-15 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 16 | 145 | 4.9E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 526 | 704 | 1.5E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 440 | 524 | 1.1E-27 | - |
| SMART | SM00220 | serkin_6 | 447 | 707 | 1.7E-53 | IPR000719 |
| SMART | SM00091 | pas_2 | 18 | 85 | 2.4E-6 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 37 | 128 | 9.7E-11 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 39 | 87 | 12.356763 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 447 | 707 | 42.618969 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 566 | 578 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 453 | 474 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 670 | 692 | 1.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 626 | 648 | 1.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 607 | 617 | 1.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 521 | 534 | 1.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 560 | 578 | 1.4E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 246 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_047259283.1 | probable serine/threonine-protein kinase SIS8 isoform X1 [Capsicum annuum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3BPY6 | Serine/threonine-protein kinase EDR1 OS=Capsicum chinense OX=80379 GN=BC332_20394 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology