halophFGD

Basic Information

Locus ID: gene-LOC132609674

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: F-box protein At5g03100-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	119891401	119895063	-	gene-LOC132609674

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.68	52,886.44 Da	52.52	98.90	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08387	FBD	377	419	2.7E-5	IPR006566
SUPERFAMILY	SSF52047	RNI-like	108	241	4.32E-7	-
SUPERFAMILY	SSF81383	F-box domain	3	62	2.29E-9	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	67	260	6.0E-8	IPR032675
SMART	SM00579	9598neu4hmm	376	454	0.0046	IPR006566

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G78760.1	F-box/RNI-like superfamily protein.
RefSeq	XP_033514617.1	F-box/LRR-repeat protein At3g03360-like [Nicotiana tomentosiformis]
Swiss-Prot	Q9ZV94	Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana OX=3702 GN=At1g78760 PE=4 SV=1
TrEMBL	A0A1S3XYY1	F-box/LRR-repeat protein At3g03360-like OS=Nicotiana tabacum OX=4097 GN=LOC107770156 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg3974
Aizoaceae	Mesembryanthemum crystallinum	34	gene_17174, gene_17440, gene_18204, gene_21078, gene_21079 ... gene_21123, gene_21124, gene_21126, gene_21127, gene_21128, gene_21129, gene_22186, gene_22187, gene_238, gene_239, gene_240, gene_24445, gene_25944, gene_25945, gene_25946, gene_25949, gene_25951, gene_25959, gene_25960, gene_25961, gene_262, gene_263, gene_397, gene_398, gene_400, gene_6464, gene_6465, gene_8234, gene_8235
Amaranthaceae	Atriplex hortensis	17	Ah006344, Ah008886, Ah008887, Ah008891, Ah011938, Ah013598 ... Ah017370, Ah017379, Ah017873, Ah017876, Ah023906, Ah023907, Ah023909, Ah023912, Ah023913, Ah023914, Ah023915
Amaranthaceae	Beta vulgaris	3	BVRB_6g135730, BVRB_6g148480, BVRB_8g181500
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg29308, Sbi_jg3544, Sbi_jg3545, Sbi_jg3546, Sbi_jg39262 ... Sbi_jg57477
Amaranthaceae	Salicornia europaea	3	Seu_jg11118, Seu_jg25165, Seu_jg6417
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000871, GOSA_00002017, GOSA_00002023, GOSA_00002024 ... GOSA_00008556, GOSA_00023935
Amaranthaceae	Suaeda glauca	38	Sgl00177, Sgl03204, Sgl03216, Sgl05228, Sgl05235, Sgl08311 ... Sgl08619, Sgl11784, Sgl11941, Sgl35772, Sgl35773, Sgl35774, Sgl35778, Sgl35808, Sgl35810, Sgl35812, Sgl41085, Sgl41086, Sgl41087, Sgl41123, Sgl41125, Sgl45763, Sgl45803, Sgl50507, Sgl63236, Sgl63237, Sgl63238, Sgl63239, Sgl63372, Sgl63373, Sgl63374, Sgl63375, Sgl63376, Sgl63377, Sgl67848, Sgl67849, Sgl67850, Sgl78069
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000003161, gene:ENSEOMG00000003283 ... gene:ENSEOMG00000009829, gene:ENSEOMG00000012500, gene:ENSEOMG00000012551, gene:ENSEOMG00000014675, gene:ENSEOMG00000027282, gene:ENSEOMG00000030141, gene:ENSEOMG00000042580, gene:ENSEOMG00000046836, gene:ENSEOMG00000047041, gene:ENSEOMG00000048338, gene:ENSEOMG00000048657
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0014180, CQ.Regalona.r1.1BG0014190 ... CQ.Regalona.r1.1BG0014200, CQ.Regalona.r1.1BG0014210, CQ.Regalona.r1.4BG0024710, CQ.Regalona.r1.6AG0004980, CQ.Regalona.r1.6AG0004990, CQ.Regalona.r1.6AG0023810, CQ.Regalona.r1.6BG0005170, CQ.Regalona.r1.6BG0005180, CQ.Regalona.r1.6BG0005190, CQ.Regalona.r1.6BG0025140, CQ.Regalona.r1.8AG0004030, CQ.Regalona.r1.8BG0000770, CQ.Regalona.r1.8BG0004190
Apiaceae	Apium graveolens	1	Ag3G00260
Arecaceae	Cocos nucifera	1	COCNU_06G010190
Arecaceae	Phoenix dactylifera	2	gene-LOC103714491, gene-LOC103719351
Asteraceae	Flaveria trinervia	1	Ftri15G16068
Brassicaceae	Arabidopsis thaliana	10	AT1G49610.1, AT1G57690.1, AT3G03360.1, AT3G18150.1 ... AT3G28410.1, AT5G02700.1, AT5G02910.1, AT5G02920.1, AT5G02930.1, AT5G03100.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10013441m.g.v1.0, Thhalv10014018m.g.v1.0 ... Thhalv10014041m.g.v1.0, Thhalv10015785m.g.v1.0, Thhalv10017536m.g.v1.0, Thhalv10021970m.g.v1.0, Thhalv10022165m.g.v1.0, Thhalv10022252m.g.v1.0, Thhalv10025165m.g.v1.0, Thhalv10026908m.g.v1.0, Thhalv10027265m.g.v1.0, Thhalv10027555m.g.v1.0, Thhalv10029332m.g.v1.0, Thhalv10029491m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g05870.v2.2, Sp6g39690.v2.2, SpUn0028_0070.v2.2
Brassicaceae	Brassica nigra	17	BniB01g045590.2N, BniB01g046270.2N, BniB01g046290.2N ... BniB02g040550.2N, BniB02g057230.2N, BniB02g057250.2N, BniB02g057330.2N, BniB02g057340.2N, BniB03g039070.2N, BniB04g019020.2N, BniB05g002970.2N, BniB05g002980.2N, BniB05g023310.2N, BniB08g000850.2N, BniB08g000920.2N, BniB08g025960.2N, BniB08g025970.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g29060
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-986
Plantaginaceae	Plantago ovata	66	Pov_00000097, Pov_00000302, Pov_00001140, Pov_00001142 ... Pov_00002228, Pov_00002664, Pov_00003570, Pov_00004423, Pov_00006395, Pov_00006966, Pov_00006967, Pov_00007045, Pov_00014220, Pov_00018783, Pov_00018784, Pov_00018786, Pov_00018787, Pov_00019745, Pov_00019746, Pov_00019970, Pov_00019971, Pov_00019972, Pov_00019976, Pov_00020011, Pov_00020012, Pov_00020014, Pov_00020015, Pov_00020017, Pov_00020020, Pov_00020309, Pov_00022336, Pov_00022337, Pov_00022339, Pov_00022341, Pov_00022352, Pov_00022354, Pov_00022355, Pov_00022356, Pov_00022358, Pov_00022590, Pov_00022704, Pov_00023309, Pov_00025764, Pov_00025765, Pov_00026111, Pov_00028397, Pov_00028449, Pov_00029108, Pov_00030886, Pov_00031129, Pov_00032079, Pov_00032925, Pov_00038493, Pov_00038494, Pov_00038495, Pov_00038496, Pov_00038497, Pov_00038499, Pov_00039026, Pov_00039147, Pov_00039780, Pov_00040059, Pov_00040070, Pov_00040075, Pov_00041523, Pov_00041592
Plumbaginaceae	Limonium bicolor	1	Lb2G09011
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1685, evm.TU.LG13.223, evm.TU.LG13.224 ... evm.TU.LG14.924
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1460, evm.TU.Scaffold_9_RagTag.1322 ... evm.TU.Scaffold_9_RagTag.1323, evm.TU.Scaffold_9_RagTag.1324
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-11955, nbisL1-mrna-20845, nbisL1-mrna-25001 ... nbisL1-mrna-25002, nbisL1-mrna-25003, nbisL1-mrna-25004, nbisL1-mrna-25005, nbisL1-mrna-25006, nbisL1-mrna-25009, nbisL1-mrna-25026
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1141
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11028, nbisL1-mrna-21299
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.839
Rhizophoraceae	Kandelia obovata	1	Maker00013954
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10367, nbisL1-mrna-1243
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15416, nbisL1-mrna-24508, nbisL1-mrna-4758
Salicaceae	Populus euphratica	2	populus_peu01313, populus_peu16965
Solanaceae	Lycium barbarum	34	gene-LOC132606110, gene-LOC132606267, gene-LOC132606516 ... gene-LOC132609230, gene-LOC132609669, gene-LOC132609670, gene-LOC132609671, gene-LOC132609672, gene-LOC132609673, gene-LOC132609674, gene-LOC132616911, gene-LOC132618683, gene-LOC132621803, gene-LOC132622650, gene-LOC132622792, gene-LOC132623899, gene-LOC132624151, gene-LOC132624843, gene-LOC132624873, gene-LOC132624906, gene-LOC132626358, gene-LOC132627453, gene-LOC132627455, gene-LOC132627456, gene-LOC132627457, gene-LOC132627477, gene-LOC132627479, gene-LOC132627480, gene-LOC132627481, gene-LOC132631343, gene-LOC132635942, gene-LOC132644394, gene-LOC132645534, gene-LOC132645654
Solanaceae	Solanum chilense	19	SOLCI000110700, SOLCI000110800, SOLCI000323400 ... SOLCI001957500, SOLCI002521200, SOLCI002521600, SOLCI002711700, SOLCI003174600, SOLCI003664500, SOLCI003664700, SOLCI003664800, SOLCI004772500, SOLCI004943400, SOLCI005373500, SOLCI006481800, SOLCI006728100, SOLCI007137300, SOLCI007137400, SOLCI007296700
Solanaceae	Solanum pennellii	25	gene-LOC107004363, gene-LOC107006701, gene-LOC107008863 ... gene-LOC107009290, gene-LOC107009465, gene-LOC107010438, gene-LOC107015964, gene-LOC107017002, gene-LOC107017003, gene-LOC107017287, gene-LOC107017373, gene-LOC107020226, gene-LOC107023947, gene-LOC107026213, gene-LOC107026864, gene-LOC107026865, gene-LOC107026888, gene-LOC107027319, gene-LOC107027391, gene-LOC107027419, gene-LOC107027448, gene-LOC107027450, gene-LOC107027461, gene-LOC107028109, gene-LOC114075190
Tamaricaceae	Reaumuria soongarica	1	MSTRG.16278_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC07G2267