Basic Information
Locus ID:
gene-LOC132609666
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 119720718 | 119737499 | - | gene-LOC132609666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 131,900.67 Da | 46.42 | 71.90 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 716 | 772 | 1.52806E-29 | - |
| Pfam | PF01426 | BAH domain | 458 | 566 | 2.5E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 717 | 773 | 8.8E-12 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 780 | 1141 | 3.8E-35 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 713 | 776 | 3.3E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 607 | 1142 | 1.83E-73 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 609 | 1159 | 1.0E-240 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 391 | 555 | 1.8E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 935 | 1108 | 1.0E-240 | - |
| SMART | SM00298 | chromo_7 | 716 | 775 | 1.8E-13 | IPR000953 |
| SMART | SM00439 | BAH_4 | 455 | 570 | 5.6E-20 | IPR001025 |
| PIRSF | PIRSF037404 | DNMT1 | 54 | 171 | 170.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1057 | 1153 | 4.1E-19 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 190 | 398 | 4000.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 768 | 1038 | 4.0E-36 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 544 | 682 | 3.7E-5 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 400 | 542 | 4.2E-7 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 455 | 570 | 18.025299 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 607 | 1149 | 45.94487 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 717 | 773 | 13.498701 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 787 | 799 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 740 | 760 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 830 | 844 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 608 | 624 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 876 | 889 | 2.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 361 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010324482.1 | DNA (cytosine-5)-methyltransferase CMT2 [Solanum lycopersicum] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6N2CAV1 | DNA (cytosine-5-)-methyltransferase OS=Solanum chilense OX=4083 GN=EJD97_013041 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology