Basic Information
Locus ID:
gene-LOC132609568
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 116276466 | 116284563 | - | gene-LOC132609568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 47,265.25 Da | 46.91 | 82.89 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 317 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 320 | 2.83E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 386 | 3.9E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 65 | 99 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 0.028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 318 | 0.018 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 63 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_016549566.2 | autophagy-related protein 18a [Capsicum annuum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8EQS8 | autophagy-related protein 18a-like OS=Capsicum annuum OX=4072 GN=LOC107849517 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology