Basic Information
Locus ID:
gene-LOC132609553
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6030322 | 6036494 | - | gene-LOC132609553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 112,026.88 Da | 45.98 | 110.75 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 263 | 327 | 1.0E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 452 | 721 | 3.04E-20 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 649 | 965 | 2.88E-33 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 328 | 3.09E-19 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 121 | 1.3E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 538 | 638 | 8.9E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 853 | 1009 | 4.4E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 639 | 852 | 6.0E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 537 | 2.1E-6 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 331 | 1.8E-19 | IPR013083 |
| SMART | SM00185 | arm_5 | 575 | 617 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 713 | 755 | 420.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 800 | 840 | 24.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 1.2E-18 | IPR003613 |
| SMART | SM00185 | arm_5 | 671 | 711 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 873 | 913 | 50.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 756 | 797 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 406 | 445 | 460.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 586 | 630 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 21.426052 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 725 | 753 | 8.9774 | IPR000225 |
| Coils | Coil | Coil | 60 | 87 | - | - |
| Coils | Coil | Coil | 125 | 152 | - | - |
| Coils | Coil | Coil | 342 | 362 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_049407102.1 | U-box domain-containing protein 24-like [Solanum stenotomum] | 0 |
| TrEMBL | A0A2G2W155 | RING-type E3 ubiquitin transferase OS=Capsicum baccatum OX=33114 GN=CQW23_22535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |