Basic Information
Locus ID:
gene-LOC132609516
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 114638000 | 114677629 | - | gene-LOC132609516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 140,841.83 Da | 41.43 | 75.81 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 139 | 227 | 4.37585E-13 | IPR003340 |
| CDD | cd10017 | B3_DNA | 664 | 730 | 1.14973E-10 | IPR003340 |
| CDD | cd10017 | B3_DNA | 404 | 470 | 1.47764E-14 | IPR003340 |
| CDD | cd01650 | RT_nLTR_like | 784 | 1033 | 1.02171E-52 | - |
| CDD | cd10017 | B3_DNA | 529 | 600 | 1.10868E-13 | IPR003340 |
| CDD | cd10017 | B3_DNA | 274 | 343 | 6.18693E-12 | IPR003340 |
| CDD | cd10017 | B3_DNA | 8 | 94 | 9.09577E-17 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 395 | 476 | 4.8E-14 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 142 | 225 | 3.2E-16 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 655 | 737 | 4.2E-11 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 268 | 349 | 1.1E-12 | IPR003340 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 793 | 1031 | 2.8E-41 | IPR000477 |
| Pfam | PF02362 | B3 DNA binding domain | 524 | 610 | 2.3E-14 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 18 | 95 | 1.1E-11 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 521 | 608 | 5.62E-16 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 263 | 355 | 2.94E-16 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 652 | 742 | 1.92E-14 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 5 | 102 | 4.32E-20 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 138 | 230 | 5.76E-19 | IPR015300 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 746 | 999 | 1.39E-16 | IPR043502 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 391 | 480 | 1.22E-17 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 123 | 232 | 1.9E-18 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 376 | 484 | 9.9E-16 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 634 | 743 | 3.3E-10 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 493 | 612 | 2.0E-15 | IPR015300 |
| Gene3D | G3DSA:3.30.70.270 | - | 824 | 1004 | 2.8E-8 | IPR043128 |
| Gene3D | G3DSA:2.40.330.10 | - | 236 | 357 | 2.1E-15 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 3 | 98 | 1.5E-20 | IPR015300 |
| SMART | SM01019 | B3_2 | 392 | 486 | 5.5E-10 | IPR003340 |
| SMART | SM01019 | B3_2 | 10 | 96 | 1.6E-16 | IPR003340 |
| SMART | SM01019 | B3_2 | 140 | 232 | 2.4E-16 | IPR003340 |
| SMART | SM01019 | B3_2 | 265 | 359 | 4.1E-7 | IPR003340 |
| SMART | SM01019 | B3_2 | 522 | 615 | 3.2E-7 | IPR003340 |
| SMART | SM01019 | B3_2 | 653 | 746 | 2.7E-11 | IPR003340 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 770 | 1033 | 21.031525 | IPR000477 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 264 | 358 | 10.91239 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 139 | 233 | 13.746792 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 391 | 485 | 11.518755 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 651 | 745 | 10.263721 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 7 | 96 | 13.16863 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 521 | 617 | 11.222623 | IPR003340 |
| Coils | Coil | Coil | 234 | 254 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31690.1 | Transcriptional factor B3 family protein. | 0 |
| RefSeq | XP_049378555.1 | B3 domain-containing protein REM14-like isoform X1 [Solanum stenotomum] | 0 |
| O81778 | B3 domain-containing protein REM9 OS=Arabidopsis thaliana OX=3702 GN=REM9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3ANJ4 | B3 domain-containing protein REM14-like OS=Capsicum annuum OX=4072 GN=T459_03693 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |