halophFGD

Basic Information

Locus ID: gene-LOC132609505

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	11194808	11197682	-	gene-LOC132609505

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.36	86,695.33 Da	51.43	69.97	-1.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	101	177	1.5E-13	IPR025558
SUPERFAMILY	SSF56219	DNase I-like	551	609	1.19E-8	IPR036691
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	513	610	2.3E-7	IPR036691
MobiDBLite	mobidb-lite	consensus disorder prediction	314	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	386	401	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	421	511	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	237	275	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	276	313	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	237	401	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	421	462	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	466	486	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	361	385	-	-
Coils	Coil	Coil	429	456	-	-
Coils	Coil	Coil	248	268	-	-
Coils	Coil	Coil	673	693	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_009765415.1	PREDICTED: uncharacterized protein LOC104216966 [Nicotiana sylvestris]	0
TrEMBL	A0A1U7VU19	uncharacterized protein LOC104216966 OS=Nicotiana sylvestris OX=4096 GN=LOC104216966 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933