Basic Information
Locus ID:
gene-LOC132609147
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 99413474 | 99417067 | + | gene-LOC132609147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 56,574.65 Da | 43.66 | 67.35 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 342 | 364 | 4.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 264 | 287 | 5.9E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 307 | 331 | 2.7E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 302 | 335 | 2.35E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 256 | 288 | 1.49E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 336 | 370 | 1.02E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 255 | 288 | 8.9E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 370 | 2.5E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 298 | 336 | 1.4E-12 | - |
| SMART | SM00547 | zf_4 | 309 | 333 | 1.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 342 | 366 | 5.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 265 | 289 | 5.0E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 340 | 369 | 9.64205 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 263 | 287 | 9.122608 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 307 | 336 | 9.506543 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 344 | 363 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 267 | 286 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 68 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_019249199.1 | PREDICTED: zinc finger protein VAR3, chloroplastic-like [Nicotiana attenuata] | 0 |
| TrEMBL | A0A1J6I652 | Zinc finger protein var3, chloroplastic OS=Nicotiana attenuata OX=49451 GN=VAR3_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology