Basic Information
Locus ID:
gene-LOC132608789
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
bHLH-MYC and R2R3-MYB transcription factors N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 126091775 | 126094083 | + | gene-LOC132608789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 51,860.88 Da | 39.69 | 84.90 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 279 | 323 | 1.2E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 17 | 185 | 2.5E-46 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 273 | 340 | 2.36E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 267 | 339 | 2.8E-16 | IPR036638 |
| SMART | SM00353 | finulus | 280 | 329 | 2.6E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 274 | 323 | 16.183289 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 270 | - | - |
| Coils | Coil | Coil | 313 | 340 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46760.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_049349977.1 | transcription factor MYC1-like [Solanum verrucosum] | 0 |
| Q9FIP9 | Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1 | 0 | |
| TrEMBL | M1A599 | DNA binding protein OS=Solanum tuberosum OX=4113 GN=102601277 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology