Basic Information
Locus ID:
gene-LOC132608435
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 171335622 | 171342560 | - | gene-LOC132608435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 32,217.14 Da | 54.18 | 51.15 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 212 | 269 | 6.8E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 1.2E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 30 | 110 | 4.9E-20 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 26 | 100 | 7.19E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 214 | 2.2E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 158 | 5.75E-20 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 238 | 275 | 3.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 237 | 1.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 207 | 2.7E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 98 | 24.856089 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 164 | 31.865026 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 208 | 11.854899 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_016486505.1 | PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Nicotiana tabacum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4BC51 | E3 ubiquitin-protein ligase MIEL1-like OS=Nicotiana tabacum OX=4097 GN=LOC107806785 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology