Basic Information
Locus ID:
gene-LOC132608403
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
TIR1
Description:
Transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 171325531 | 171329716 | + | gene-LOC132608403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 64,736.91 Da | 51.72 | 97.51 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 476 | 495 | 0.82 | IPR001611 |
| Pfam | PF18511 | F-box | 4 | 42 | 1.7E-15 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 2.4E-25 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 37 | 6.54E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 530 | 8.11E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 572 | 1.0E-186 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 6.6E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 530.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 55.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 0.62 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 151 | 188 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 160.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_016577309.2 | protein TRANSPORT INHIBITOR RESPONSE 1 [Capsicum annuum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G2ZEW4 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Capsicum annuum OX=4072 GN=T459_18588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology