Basic Information
Locus ID:
gene-LOC132608269
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 122116816 | 122117283 | - | gene-LOC132608269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 17,960.89 Da | 54.02 | 77.87 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 102 | 144 | 8.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 149 | 5.78E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 149 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 103 | 143 | 6.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 103 | 144 | 12.326995 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15530.6 | - | 0 |
| RefSeq | XP_009594258.1 | uncharacterized protein LOC104090783 [Nicotiana tomentosiformis] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6HYR4 | E3 ubiquitin-protein ligase mbr1 OS=Nicotiana attenuata OX=49451 GN=MBR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608083, gene-LOC132608086, gene-LOC132608267 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006504300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032069 |