Basic Information
Locus ID:
gene-LOC132608268
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 122112887 | 122113255 | - | gene-LOC132608268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 14,271.76 Da | 49.73 | 75.08 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 69 | 111 | 3.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 117 | 6.48E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 119 | 3.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 70 | 110 | 2.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 70 | 111 | 12.666314 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009594258.1 | uncharacterized protein LOC104090783 [Nicotiana tomentosiformis] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6HYR4 | E3 ubiquitin-protein ligase mbr1 OS=Nicotiana attenuata OX=49451 GN=MBR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21106, gene_21107 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G30016, Ftri9G03016 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00005098, Pov_00012293, Pov_00017219, Pov_00027224 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608268 |