Basic Information
Locus ID:
gene-LOC132608267
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 122106049 | 122106537 | - | gene-LOC132608267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 18,876.84 Da | 53.02 | 79.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 109 | 149 | 1.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 156 | 2.34E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 158 | 7.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 110 | 150 | 2.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 151 | 11.36805 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009594258.1 | uncharacterized protein LOC104090783 [Nicotiana tomentosiformis] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6HYR4 | E3 ubiquitin-protein ligase mbr1 OS=Nicotiana attenuata OX=49451 GN=MBR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608083, gene-LOC132608086, gene-LOC132608267 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006504300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032069 |