Basic Information
Locus ID:
gene-LOC132608083
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 106684027 | 106684770 | - | gene-LOC132608083 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 28,342.62 Da | 49.33 | 69.88 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 199 | 241 | 1.08921E-15 | - |
| Pfam | PF13639 | Ring finger domain | 199 | 241 | 5.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 246 | 1.74E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 247 | 6.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 240 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 241 | 12.858103 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010327573.1 | probable E3 ubiquitin-protein ligase RHG1A [Solanum lycopersicum] | 0 |
| Q4R6Y5 | E3 ubiquitin-protein ligase ZNRF4 OS=Macaca fascicularis OX=9541 GN=ZNRF4 PE=2 SV=1 | 0 | |
| TrEMBL | M1D7Q5 | C-terminal zinc-finger OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608083, gene-LOC132608086, gene-LOC132608267 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006504300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032069 |