Basic Information
Locus ID:
gene-LOC132607490
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 131261503 | 131265511 | + | gene-LOC132607490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 97,600.00 Da | 24.23 | 101.76 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 211 | 267 | 3.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 136 | 158 | 0.21 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 87 | 127 | 2.6E-6 | IPR025875 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 610 | 880 | 9.3E-27 | IPR001245 |
| SUPERFAMILY | SSF52047 | RNI-like | 48 | 272 | 9.02E-42 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 196 | 509 | 7.78E-58 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 609 | 883 | 1.02E-48 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 579 | 684 | 3.4E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 173 | 5.2E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 686 | 887 | 4.9E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 174 | 274 | 6.9E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 279 | 524 | 1.8E-71 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 230 | 254 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 326 | 350 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 422 | 447 | 97.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 86 | 109 | 15.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 606 | 885 | 25.516829 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 136 | 159 | 7.711955 | IPR001611 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 729 | 741 | - | IPR008266 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 89 | 102 | 7.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 134 | 147 | 7.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_049402646.1 | leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Solanum stenotomum] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7IJU1 | Protein kinase domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101262268 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15909, jg33258 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021809 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59319, Sbi_jg63302 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23575 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018383 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02702, Sgl07860 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012639, gene:ENSEOMG00000029738 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0021030, CQ.Regalona.r1.3BG0021850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30186740 |
| Apiaceae | Apium graveolens | 2 | Ag10G02355, Ag4G01394 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G014890, COCNU_14G012240 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696298, gene-LOC120107000 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1487.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G11183 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G41820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016216m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24080.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003900.2N, BniB06g001080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1067 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1215 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006672 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28910 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.573, BH03.682, CH03.778 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0560430, gene-QOZ80_7BG0591880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0245080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042146 |
| Poaceae | Oryza coarctata | 2 | Oco13G003640, Oco14G004060 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g10630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G075400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303847, Pt_Chr0303856 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G016280, Chr24G003520, Chr28G002950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G244500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018820, gene_TRIDC3BG023170 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G142200.1, TraesCS3B02G162500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095370_P002, Zm00001eb303060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26676 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6173 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.490, evm.TU.LG15.448 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1172 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6448 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4252 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.803 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016432 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10987 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13370 |
| Salicaceae | Populus euphratica | 2 | populus_peu10957, populus_peu26105 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607490, gene-LOC132613777 |
| Solanaceae | Solanum chilense | 2 | SOLCI001902500, SOLCI004509000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002720, gene-LOC107018377 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7523_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2452 |