Basic Information
Locus ID:
gene-LOC132607373
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 129110678 | 129113778 | - | gene-LOC132607373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 41,181.40 Da | 42.94 | 82.35 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 109 | 146 | 9.68172E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 153 | 351 | 4.5E-77 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 164 | 355 | 9.15E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 219 | 3.6E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 221 | 352 | 1.2E-32 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 147 | 8.653498 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 164 | 224 | 14.031925 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_016544886.1 | E3 ubiquitin-protein ligase SINAT2 [Capsicum annuum] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2VVM4 | RING-type E3 ubiquitin transferase OS=Capsicum baccatum OX=33114 GN=CQW23_24749 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology