Basic Information
Locus ID:
gene-LOC132607261
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 169327535 | 169335995 | - | gene-LOC132607261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 84,355.43 Da | 49.11 | 67.62 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 494 | 772 | 9.12454E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 738 | 772 | 0.083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 564 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 654 | 689 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 607 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 522 | 5.9E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 494 | 772 | 1.7E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 455 | 622 | 2.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 623 | 772 | 2.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 487 | 522 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 564 | 8.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 692 | 731 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 648 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 733 | 772 | 8.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 689 | 2.7E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 568 | 608 | 0.0036 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 532 | 564 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 497 | 531 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 772 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 658 | 698 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 532 | 564 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 617 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 740 | 772 | 12.024679 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 509 | 523 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 509 | 523 | 4.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 759 | 772 | 4.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 551 | 565 | 4.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 410 | - | - |
| Coils | Coil | Coil | 79 | 111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | NP_001352548.1 | transcriptional corepressor LUG3 [Solanum lycopersicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2WNA9 | Transcriptional corepressor LEUNIG OS=Capsicum baccatum OX=33114 GN=CQW23_15808 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology