Basic Information
Locus ID:
gene-LOC132607257
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
UBP12
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 127254753 | 127272824 | + | gene-LOC132607257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 134,530.16 Da | 41.23 | 81.94 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 61 | 184 | 2.49345E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 202 | 555 | 9.30159E-164 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 204 | 497 | 1.8E-45 | IPR001394 |
| Pfam | PF00917 | MATH domain | 66 | 185 | 1.3E-17 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 916 | 1126 | 9.7E-58 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 654 | 906 | 6.8E-79 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 581 | 1.33E-95 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 60 | 193 | 6.7E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 201 | 554 | 2.2E-87 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 200 | 3.5E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 714 | 831 | 7.8E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 832 | 929 | 9.4E-27 | - |
| SMART | SM00061 | math_3 | 64 | 165 | 1.1E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 204 | 553 | 38.143429 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 184 | 37.164536 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 444 | 461 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 205 | 220 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| Coils | Coil | Coil | 569 | 589 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_016555035.2 | ubiquitin C-terminal hydrolase 12 isoform X1 [Capsicum annuum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8FH01 | ubiquitinyl hydrolase 1 OS=Capsicum annuum OX=4072 GN=LOC107854542 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology