Basic Information
Locus ID:
gene-LOC132607240
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 169275571 | 169291771 | - | gene-LOC132607240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 35,942.12 Da | 50.59 | 72.31 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 47 | 325 | 6.31141E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 33 | 75 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 117 | 3.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 325 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 160 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 207 | 241 | 0.04 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 325 | 3.66E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 176 | 2.0E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 325 | 3.6E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 121 | 161 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 75 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 325 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 117 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 201 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 242 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 0.21 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 293 | 325 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 293 | 325 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 117 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 170 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 117 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 84 | 9.238559 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 62 | 76 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 104 | 118 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 312 | 325 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 62 | 76 | 4.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_009763485.1 | PREDICTED: transcriptional corepressor LEUNIG-like [Nicotiana sylvestris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7VNL7 | transcriptional corepressor LEUNIG-like OS=Nicotiana sylvestris OX=4096 GN=LOC104215395 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology