Basic Information
Locus ID:
gene-LOC132607114
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 124035770 | 124038364 | + | gene-LOC132607114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 88,822.92 Da | 41.87 | 103.28 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 256 | 316 | 6.1E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 354 | 372 | 1.6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 673 | 715 | 9.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 75 | 2.6E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 146 | 194 | 1.0E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 518 | 575 | 2.5E-9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 333 | 720 | 1.26E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 62 | 368 | 4.08E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 200 | 300 | 1.2E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 756 | 3.3E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 306 | 469 | 1.5E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 199 | 3.7E-38 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 515 | 539 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 654 | 678 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 563 | 587 | 6.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 135 | 159 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 255 | 278 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 207 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 352 | 374 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 279 | 303 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 702 | 725 | 100.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 517 | 539 | 7.242212 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 354 | 367 | 3.5E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 678 | 691 | 3.5E-6 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_016512654.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Nicotiana tabacum] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1S4DHB4 | LRR receptor-like serine/threonine-protein kinase GSO1 OS=Nicotiana tabacum OX=4097 GN=LOC107829703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |