Basic Information
Locus ID:
gene-LOC132607063
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 122612444 | 122626460 | + | gene-LOC132607063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 129,941.75 Da | 38.48 | 71.06 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 764 | 813 | 4.0E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 551 | 606 | 7.4E-14 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 825 | 878 | 5.55E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1055 | 1150 | 1.33E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 904 | 963 | 5.76E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 904 | 964 | 3.8E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1003 | 1171 | 1.5E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 819 | 884 | 3.1E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 905 | 962 | 2.2E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 830 | 871 | 2.1E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 903 | 964 | 8.7246 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 828 | 873 | 10.2465 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 906 | 961 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 831 | 870 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 419 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_009796785.1 | PREDICTED: uncharacterized protein LOC104243304 isoform X2 [Nicotiana sylvestris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7YDA4 | uncharacterized protein LOC104243304 isoform X2 OS=Nicotiana sylvestris OX=4096 GN=LOC104243304 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology