Basic Information
Locus ID:
gene-LOC132606998
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 121072294 | 121081201 | + | gene-LOC132606998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 59,754.37 Da | 37.60 | 83.12 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 53 | 311 | 3.45498E-132 | - |
| Pfam | PF00069 | Protein kinase domain | 55 | 312 | 8.5E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 358 | 419 | 1.7E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 430 | 493 | 5.9E-15 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 37 | 334 | 8.23E-83 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 337 | 505 | 3.27E-44 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 42 | 135 | 1.5E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 136 | 320 | 1.8E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 321 | 496 | 2.1E-52 | - |
| SMART | SM00054 | efh_1 | 467 | 495 | 4.6E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 54 | 312 | 8.8E-93 | IPR000719 |
| SMART | SM00054 | efh_1 | 359 | 387 | 8.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 395 | 423 | 0.065 | IPR002048 |
| SMART | SM00054 | efh_1 | 431 | 459 | 5.8E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 355 | 390 | 14.792358 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 391 | 426 | 8.990116 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 427 | 462 | 14.457615 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 463 | 498 | 13.592857 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 54 | 312 | 45.572975 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 60 | 83 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 368 | 380 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 476 | 488 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 440 | 452 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 174 | 186 | - | IPR008271 |
| Coils | Coil | Coil | 377 | 397 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_016575735.1 | calcium-dependent protein kinase 13 [Capsicum annuum] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G3BFQ8 | Calcium-dependent protein kinase 7 OS=Capsicum chinense OX=80379 GN=BC332_26140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology