Basic Information
Locus ID:
gene-LOC132606779
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
PDC3
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 113810578 | 113814824 | - | gene-LOC132606779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 65,188.72 Da | 28.52 | 90.08 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 404 | 586 | 6.07463E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 45 | 206 | 3.90541E-91 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 42 | 209 | 2.6E-36 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 239 | 356 | 2.8E-21 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 449 | 574 | 2.3E-13 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 598 | 2.5E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 42 | 217 | 1.04E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 228 | 382 | 9.82E-34 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 399 | 585 | 2.4E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 38 | 214 | 6.3E-62 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 229 | 391 | 1.2E-42 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 37 | 598 | 1.4E-210 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_009769363.1 | PREDICTED: pyruvate decarboxylase 1-like [Nicotiana sylvestris] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2VSN7 | pyruvate decarboxylase OS=Capsicum baccatum OX=33114 GN=CQW23_23691 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology