Basic Information
Locus ID:
gene-LOC132606690
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
CPK6
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 110712131 | 110713379 | + | gene-LOC132606690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 18,472.23 Da | 36.60 | 102.13 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 2 | 159 | 9.6E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 151 | 6.74E-46 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 34 | 8.8E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 35 | 163 | 7.8E-35 | - |
| SMART | SM00220 | serkin_6 | 1 | 162 | 9.0E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 164 | 30.802946 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 69 | 81 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17290.1 | Calcium-dependent protein kinase family protein. Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. | 0 |
| RefSeq | XP_016565633.1 | calcium-dependent protein kinase 4 [Capsicum annuum] | 0 |
| A5A7I7 | Calcium-dependent protein kinase 4 OS=Solanum tuberosum OX=4113 GN=CPK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9GN98 | Calcium-dependent protein kinase 26 OS=Gossypium harknessii OX=34285 GN=Gohar_009573 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg58837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004710, gene:ENSEOMG00000007423 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00766 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g190.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036522 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.84, Contig80_1.3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006613 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600906 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G009170, Chr18G009200 |
| Poaceae | Zea mays | 1 | Zm00001eb351760_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47862 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1077 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5700 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-798 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606690 |
| Zosteraceae | Zostera marina | 2 | Zosma03g11280.v3.1, Zosma06g15170.v3.1 |