Basic Information
Locus ID:
gene-LOC132606635
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 109291535 | 109304288 | + | gene-LOC132606635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 195,464.38 Da | 48.66 | 86.85 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1405 | 1805 | 3.65446E-122 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1453 | 1810 | 6.5E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 54 | 583 | 1.04E-37 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1397 | 1803 | 3.92E-95 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1344 | 1572 | 6.6E-45 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1682 | 1808 | 1.4E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 130 | 448 | 1.6E-47 | IPR011989 |
| SMART | SM00119 | hect_3 | 1416 | 1810 | 6.5E-88 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1429 | 1810 | 58.923969 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1066 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1212 | 1238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 915 | 992 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1750 | 1769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1750 | 1767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1018 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_006366981.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Solanum tuberosum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7IHK7 | HECT-type E3 ubiquitin transferase OS=Solanum lycopersicum OX=4081 GN=101247472 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology