Basic Information
Locus ID:
gene-LOC132606482
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 103016282 | 103022732 | + | gene-LOC132606482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 67,323.21 Da | 33.39 | 91.52 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 124 | 1.75034E-45 | - |
| Pfam | PF03000 | NPH3 family | 210 | 458 | 1.0E-85 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 26 | 116 | 1.1E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 114 | 2.51E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 10 | 120 | 2.7E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 127 | 3.5E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 482 | 86.262115 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.564283 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 593 | - | - |
| Coils | Coil | Coil | 518 | 545 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_049342896.1 | BTB/POZ domain-containing protein NPY2-like [Solanum verrucosum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | M1A3H2 | Signal transducer OS=Solanum tuberosum OX=4113 GN=102583100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology