Basic Information
Locus ID:
gene-LOC132605968
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 167105574 | 167109281 | - | gene-LOC132605968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 28,381.60 Da | 76.44 | 69.88 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 128 | 190 | 4.08632E-11 | - |
| Pfam | PF12906 | RING-variant domain | 146 | 189 | 3.1E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 192 | 1.35E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 198 | 7.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 127 | 190 | 1.8E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 120 | 196 | 17.233742 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_016494784.1 | PREDICTED: uncharacterized protein LOC107813976 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A1S4C164 | uncharacterized protein LOC107813976 OS=Nicotiana tabacum OX=4097 GN=LOC107813976 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology