Basic Information
Locus ID:
gene-LOC132605963
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 14006442 | 14014043 | + | gene-LOC132605963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 56,414.52 Da | 62.68 | 79.55 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 269 | 317 | 7.03856E-15 | - |
| Pfam | PF12906 | RING-variant domain | 269 | 316 | 4.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 320 | 5.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 325 | 1.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 268 | 317 | 4.7E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 261 | 323 | 19.718292 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049410862.1 | uncharacterized protein LOC125874094 isoform X1 [Solanum stenotomum] | 0 |
| TrEMBL | A0A2G2WJA4 | RING-CH-type domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_14407 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology